PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000134.1.g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 791aa    MW: 90649.4 Da    PI: 6.4427
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000134.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.67.6e-3285176291
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwev 78 
                                     fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v
  FANhyb_rscf00000134.1.g00005.1  85 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVV 163
                                     9***************************************998888545677889************************ PP

                            FAR1  79 tkleleHnHelap 91 
                                     + +++eHnHel+p
  FANhyb_rscf00000134.1.g00005.1 164 SGFVKEHNHELVP 176
                                     ***********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-3085176IPR004330FAR1 DNA binding domain
PfamPF105517.9E-32297389IPR018289MULE transposase domain
PfamPF044344.0E-11565611IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.226577613IPR007527Zinc finger, SWIM-type
SMARTSM005759.4E-9588615IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MDNEMIEFDI GLGGREGDDD FVEIEHPVED EEMVDSPLIG SASGSVNGVG FSGGSGEIYL  60
PEGDLLDLEP YDGMEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRRDGA IIQRQFVCAK  120
EGFRNLNEKR TKDREIKRPR TITRVGCKAS LSVKMQDSGK WVVSGFVKEH NHELVPPDQV  180
HCLRSHRQIS GSAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD CRNYMRNNRQ  240
RSLDGDIQML LDYLRQMQAD NQNFFYAVQG NEDQAMGNVI WADPKAKMNY NYFGDTVTFD  300
TTYRSNRYRL PFAPITGINH HGQPVLFGCA FLINESEASF VWLFKTWLMA MSGRPPLSIT  360
TDYDPMIQSA IMQVFPQTRH RFCKWHIFKK CQEKLSHVFL QHPNFEADFH KCVNLTESIE  420
EFESCWLSLV DRYDLRDHEW LQTVYSARRQ WVPVYLRDTF FAEMSITQRS DSMNSYFDGY  480
VNASTNLSQF FKLYEKALES RNEKEVKADF DTMNTSPVLK TPSPMEKQAS EFYTKKIFMR  540
FQEELVGTLT FTASKGDDDG EFISYQVAKF GEDHKAYYVK LNVLEMIANC SCQMFEFSGL  600
LCRHVLAVFR VTNVLTLPPH YILKRWTRNA KSSVILEERS SDVYTNYLES HTVRYNTLRH  660
QAFKFVDGAK SSETYDLALE ALKEAATKVA HAIKNDGRNV MLNGHIRGNL VGGGSRANYT  720
IGDHDESSGQ NLSEDDMDKK IREITNELEC ANRKCEVYRA NLLSLLKDIE DHKLQLSIKV  780
ENIKISMKDG F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290092.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLM5VLX00.0M5VLX0_PRUPE; Uncharacterized protein
STRINGGLYMA14G00240.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5